CDS

Accession Number TCMCG007C04960
gbkey CDS
Protein Id XP_009117148.1
Location complement(join(2026272..2026490,2026564..2026713,2026796..2026972,2027386..2027523,2027609..2027698,2027812..2027889,2028277..2028936,2029430..2029548,2029638..2029848))
Gene LOC103842244
GeneID 103842244
Organism Brassica rapa

Protein

Length 613aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009118900.2
Definition polyadenylate-binding protein 2 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category A
Description Binds the poly(A) tail of mRNA
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K13126        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
ko03018        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003743        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006412        [VIEW IN EMBL-EBI]
GO:0006413        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006446        [VIEW IN EMBL-EBI]
GO:0006518        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006970        [VIEW IN EMBL-EBI]
GO:0008135        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009651        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0043043        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043603        [VIEW IN EMBL-EBI]
GO:0043604        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0060211        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061013        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1900151        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1903311        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTCAGGTTCAGACAACGGTGGCCCCGGCAACTCATTTCGGAACGACGTCGCTTTACGTAGGTGATCTGGATCTCAACGTGACGGACTCGCAGCTCTTCGAAGCCTTTAGCCAAATGGGCCAAGTGGTGTCTGTTCGAGTCTGCAGAGACTCAGCCACTCGCAGATCCCTCGGCTATGGTTACGTTAACTTCACCAATCCACCAGATGCTGCAAGAGCAATCCAGGAACTCAATTACATACCTCTTTATGGGAAACCTATAAGGGTTATGTATTCTCATCGTGATCCTAGTGTTCGCATCAGTGGCGCTGGTAACATTTTCATCAAGAATTTGGACCAGTCCATCGACCACAAAGCGCTACACGATACATTTTCAACCTTTGGGAACATCGTGTCGTGCAAGGTAGCCGTGGACGCTTCAGGCCAGTCAAAAGGCTACGGCTTCGTGCAATACGCCGACGAAGAGTCTGCTCAGAAAGCCATTGAGAAACTCAACGGCATGTTGCTAAACGACAAGCAAGTGTACGTTGGTCCGTTCCTTAGAAAACAAGAAAGAGACTCCACCGCAAACAAAACTAAATTCACCAACGTCTACGTGAAGAATCTCGCGGAGAGTACTACCGATGATGACTTGAAGAGCGCTTTCGCCGAGTATGGTGAGATAACGAGTGCTGTGGTGATGAAAGATGGAGAAGGAGGGAAGTCTAAGGGGTTTGGTTTTGTCAACTTCGAAAACGCTGATGATGCTGCCAAGGCTGTGGAGTCTTTGAATGGGAAGATGTTTGATGATAAGGAGTGGTATGTTGGTAGAGCTCAGAAGAAGTCTGAGAGGGAGACGGAGCTAAGGGTGCGTCGTGAAGAGAGTTTGAGGGAAGCTGCGGAGAGGTTTCAGAGTTCGAACTTGTATGTGAAGAATTTGGATTCTAGCGTTTCTGATGAGACACTCAAAGAGATGTTTTCTCCTTTTGGTACCGTTACATCTTGCAAGGTGATGTGTGATCCTAGTGGAATAAGCAAAGGGTCTGGTTTTGTTGCTTTCTCAACTCCTGAAGAAGCAACAGAAGCTATGTCACAGATGAGTGGGAAAATGGTGGAAGGCAAGCCACTCTATGTTGCTATTGCACAGCGGAAGGAAGACAGAAGGGTCAGACTACAGGCTCAGTTTTCTCAAGTGAGGCCAGTTGCAATGCCGCCATCCGCTGGTCCTCGCATGCCAATGTTTCCCCCTGGTGGTCCTGGTATTGGACAACAAATGTTCTACGGTCAGGCCCCTCCTAACATGATTCCTCCCCAGCCTGGGTATGGGTTCCAGCAGCAGCTTGTTCCTGGAATGAGACCTGGTGGTAGGGGCCATGTACCCAATTACTTCATGCCTATGGTTCAGCAACAGCAGCGTCCTGGAGGAGGAGGAAGACGCCCTGGAGGGATCCAACAGTCCCAGCACCAAGTTCCCATGATGCAGCAGCACCAGATGCATCCAAGGGGTCGGATGTTACGGTATTCTCAAGGGCGTGGCAGTGGTGGTGATGTAGCTCCATATGACATGGGCAACAACAACACAATGCCTATTGGAGCTTTGGCTTCAAATCTGGCTAATGCATCTCCAGAGCAGCAGAGGATGATGCTGGGTGAGAATCTGTACCCGTTGGTGGAGCAGCTTGAAGCAGAGTCTGCAGCCAAAGTGACTGGGATGCTTTTGGAGATGGACCAGACGGAAGTGCTCCATCTCTTGGAGTCGCCAGAAGCTCTCAAGGACAAAGTTGCAGAGGCTATGGATGTACTCAGGAGCGTCGCTGCTGGTGGTGCAGCCGAGCAGCTCGCTTCCTTGAACCTCTCTTAA
Protein:  
MAQVQTTVAPATHFGTTSLYVGDLDLNVTDSQLFEAFSQMGQVVSVRVCRDSATRRSLGYGYVNFTNPPDAARAIQELNYIPLYGKPIRVMYSHRDPSVRISGAGNIFIKNLDQSIDHKALHDTFSTFGNIVSCKVAVDASGQSKGYGFVQYADEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSTANKTKFTNVYVKNLAESTTDDDLKSAFAEYGEITSAVVMKDGEGGKSKGFGFVNFENADDAAKAVESLNGKMFDDKEWYVGRAQKKSERETELRVRREESLREAAERFQSSNLYVKNLDSSVSDETLKEMFSPFGTVTSCKVMCDPSGISKGSGFVAFSTPEEATEAMSQMSGKMVEGKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMPPSAGPRMPMFPPGGPGIGQQMFYGQAPPNMIPPQPGYGFQQQLVPGMRPGGRGHVPNYFMPMVQQQQRPGGGGRRPGGIQQSQHQVPMMQQHQMHPRGRMLRYSQGRGSGGDVAPYDMGNNNTMPIGALASNLANASPEQQRMMLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKDKVAEAMDVLRSVAAGGAAEQLASLNLS